Probability and histograms

Aitchison

aitchison_distances

all-pairspairedcondensedsingledistanceVectors

d_A(x,y)=\|\operatorname{clr}(x)-\operatorname{clr}(y)\|_2,\quad \operatorname{clr}(x)_i=\log x_i-D^{-1}\sum_j\log x_j

Strictly positive finite compositions. No pseudocount; independent row scaling preserves the result.

Shapes and Modes

Input	Layout
One sample	`[D]`
Collection X	`[...,N,D]`
Collection Y	`[...,M,D]`

Mode	Selector	Output
all-pairs	`compare(X,Y,metric=...)`	`[...,N,M]`
paired	`compare(X,Y,metric=...,mode="paired")`	`[...,N]`; equal sample counts
condensed	`compare(X,metric=...,mode="condensed")`	`[...,N*(N-1)//2]`; strict upper triangle
single	`compare(x,y,metric=...,mode="single")`	`[...]`; leading batches only

Leading batch dimensions broadcast. See mode and shape conventions.

Entry Points

Named Python entry	Function
All-pairs	`aitchison_distances`

The Python and C++ compare selectors cover every mode shown above. cdist / pairwise_distances and paired_distances select this comparison; pdist / condensed_distances select its condensed mode. single_comparison is shorthand for single mode.

Catalog aliases: aitchison.

Example

Choose Python or C++ in the top bar; the setting applies across this guide.

Python

import torch
import torchpairwise as tp

X = torch.rand(2, 2) + 0.2  # [N=2,D=2]
Y = torch.rand(3, 2) + 0.2  # [M=3,D=2]

metric = "aitchison_distances"
all_pairs = tp.compare(X, Y, metric=metric)  # [2,3]
paired_Y = Y[:2]
paired = tp.compare(X, paired_Y, metric=metric, mode="paired")  # [2]
condensed = tp.compare(X, metric=metric, mode="condensed")      # [1]
x, y = X[0], Y[0]
single = tp.compare(x, y, metric=metric, mode="single")  # scalar

C++ / LibTorch

#include <torchpairwise.h>

namespace tp = torchpairwise::ops;
auto X = at::rand({2, 2}) + 0.2;  // [N=2,D=2]
auto Y = at::rand({3, 2}) + 0.2;  // [M=3,D=2]

const std::string metric = "aitchison_distances";
tp::ComparisonOptions options;
auto all_pairs = tp::compare(X, Y, metric, "all_pairs", options);  // [2,3]
auto paired_Y = Y.narrow(0, 0, 2);
auto paired = tp::compare(X, paired_Y, metric, "paired", options);  // [2]
// [1]
auto condensed = tp::compare(X, c10::nullopt, metric, "condensed", options);
auto x = X[0], y = Y[0];
auto single = tp::compare(x, y, metric, "single", options);  // scalar

Streamed Evaluation

tp.lazy(x, y, name) binds this distance for reductions, selection and products without retaining its full generated comparison matrix. Native source factories depend on the sample family; see streamed operators and C++ use.

Numerical Contract

Floating CPU/CUDA inputs use matching float32 / float64, with lower precision promoted under autocast where supported. First derivatives follow the metric’s smooth and boundary conventions. See the detailed conventions and precision and deployment.